panthema / 2012 / 1119-eSAIS-Inducing-Suffix-and-LCP-Arrays-in-External-Memory / eSAIS-DC3-LCP-0.5.4 / stxxl / doc / tutorial_matrix.dox (Download File)
// -*- mode: c++; mode: visual-line; mode: flyspell; fill-column: 100000 -*-
/***************************************************************************
 *  doc/tutorial_matrix.dox
 *
 *  Usage Tutorial for STXXL
 *
 *  Part of the STXXL. See http://stxxl.sourceforge.net
 *
 *  Copyright (C) 2013 Daniel Feist <daniel.feist@student.kit.edu>
 *
 *  Distributed under the Boost Software License, Version 1.0.
 *  (See accompanying file LICENSE_1_0.txt or copy at
 *  http://www.boost.org/LICENSE_1_0.txt)
 **************************************************************************/
namespace stxxl {

/** \page tutorial_matrix STXXL Matrix

This section introduces into the STXXL matrix container (to learn more about the structure of stxxl::matrix, see section \ref design_matrix).

### Create a STXXL Matrix

Before using a STXXL matrix, we initially have to define and then to instantiate a matrix object. Two template parameters are required to define a stxxl::matrix container. ValueType defines the type of the contained objects (must be a POD with no references to internal memory) and BlockSizeLength specifies the side length of the square submatrices (blocks). BlockSizeLength is given in bits and must be a multiple
of k assuming a valueType of k bits. The block schedular is used for swapping of blocks and provide blocks for temporary storage and expects the type of swappable_blocks to manage as a parameter.
Can be some specialized subclass. We used matrix_swappable_block as a subclass which holds the same template parameters as the aforementioned stxxl::matrix container.

\code
// Define integer matrix

// template paramter <ValueType, BlockSideLength>
typedef stxxl::block_scheduler<stxxl::matrix_swappable_block<int, 32> > block_schedular_type;

// template paramter <ValueType, BlockSideLength>
typedef stxxl::matrix<int, 32> matrix_type;

// construct block schedular object which uses 64 MiB internal memory for caching
block_schedular_type my_bs(64*1024*1024);
\endcode

Instanciate three new height x width (3 x 3 in this example) matrices A, B and C using a block schedular. \n
Note that all values are initially set to zero.

\code
int height = 3;
int width = 3;

matrix_type A(my_bs, height, width);  // creates a new matrix A of given dimensions. Elements' values are set to zero.
matrix_type B(my_bs, height, width);  //                      B
matrix_type C(my_bs, height, width);  //                      C
\endcode

### Insert / Access elements

To insert and access elements, the STXXL matrix container intends different iterators. Iterate for example row-by-row beginning with the top row can be done with the row_major_iterator.
The operator * accesses a single element the iterator points to just now.
\code
typedef matrix_type::row_major_iterator row_iterator;

// let it_A point to the first element of matrix A and advance till the very last element of matrix A is reached
for (row_iterator it_A = A.begin(); it_A != A.end(); ++it_A)
{
  *it_A = 1; // set current matrix element to 1
}
\endcode


### Determine size of matrix

To detect the height and width of a given matrix C, we can call:

\code
std::cout << "height: " << C.get_height() << " - " << "width: " << C.get_width() << std::endl;
\endcode


### Matrix Operations

The STXXL Matrix container provides the following arithmetic operations:

- Addition, Substraction and Multiplication of two matrices A and B.
   \code
   C = A + B;
   C = A - B;
   C = A * B;
   \endcode
- Transposition and Zeroing of a matrix C.
   \code
   C.transpose();
   C.set_zero();
   \endcode

### A minimal working example of STXXL's Matrix

(See \ref examples/containers/matrix1.cpp for the sourcecode of the following example).

\snippet examples/containers/matrix1.cpp example

\example examples/containers/matrix1.cpp
This example code is explained in the \ref tutorial_matrix section
*/

} // namespace stxxl